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/**
 * Implements hook_entity_info_alter()
 */
function YOUR_FEATURE_NAME_entity_info_alter(&$entity_info) {
  $entity_info['fieldable_panels_pane']['bundles']['YOUR_FEATURE_NAME'] = array(
    'label' => t('YOUR FEATURE NAME'),
    'pane category' => t('YOUR FEATURE CATEGORY'),
    'pane top level' => FALSE,
    'pane icon' => drupal_get_path('module', 'panopoly_widgets') . '/images/icon_image.png',
    'admin' => array(
      'path' => 'admin/structure/fieldable-panels-panes/manage/%fieldable_panels_panes_type',
      'bundle argument' => 4,
      'real path' => 'admin/structure/fieldable-panels-panes/manage/YOUR_FEATURE_NAME',
      'access arguments' => array('administer fieldable panels panes'),
    ),
  );
}

/**
 * Implements hook_theme_registry_alter().
 */
function YOUR_FEATURE_NAME_theme_registry_alter(&$theme_registry) {
  // add template file
  $mod_path = drupal_get_path('module', 'YOUR_FEATURE_NAME') . '/templates';
  $theme_registry_copy = $theme_registry;       // munge on a copy
  _theme_process_registry($theme_registry_copy, 'phptemplate', 'theme_engine', 'pow', $mod_path);
  $theme_registry += array_diff_key($theme_registry_copy, $theme_registry);
  $hooks = array('node');
  foreach ($hooks as $h) {
    _YOUR_FEATURE_NAME_insert_after_first_element($theme_registry[$h]['theme paths'], $mod_path);
  }

  $theme_registry['fieldable_panels_panes__YOUR_FEATURE_NAME'] = array(
    'template' => drupal_get_path('module', 'YOUR_FEATURE_NAME') . '/templates/fieldable-panels-panes--YOUR-FEATURE-NAME',
    'theme path' => drupal_get_path('module', 'YOUR_FEATURE_NAME'),
    'type' => 'module',
  );
}

/**
 * Helper function for re-ordering arrays (needed by theme_registry_alter)
 *
 * http://www.metachunk.com/blog/adding-module-path-drupal-7-theme-registry
 */
function _YOUR_FEATURE_NAME_insert_after_first_element(&$a, $element) {
  if (is_array($a)) {
    $first_element = array_shift($a);
    array_unshift($a, $first_element, $element);
  }
}

/**
 * Implements hook_preprocess_panels_pane().
 */
function YOUR_FEATURE_NAME_preprocess_panels_pane(&$variables){
  if(isset($variables['content']['#bundle'])){
    $bundle = $variables['content']['#bundle'];
    if (strpos($bundle, 'YOUR_FEATURE_NAME') === 0){
      $variables['theme_hook_suggestions'][] = 'fieldable_panels_panes__YOUR_FEATURE_NAME';
    }
  }
}